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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
185
ChIP-seq
174
single cell RNA-seq
129
total RNA-seq
28
snATAC-seq
23
pCHi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
1
DNase-seq
Assay category
303
Transcription
225
DNA accessibility
185
DNA binding
21
DNA methylation
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
227
August, 2021
114
August, 2017
95
February, 2023
55
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
24
February, 2020
22
March, 2020
19
April, 2020
15
May, 2023
13
November, 2017
9
February, 2021
9
July, 2019
8
January, 2021
8
October, 2017
4
July, 2018
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
Available data
bam
1769
bigWig
1073
tsv
980
bed narrowPeak
560
bigBed narrowPeak
377
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
765
Homo sapiens
Biosample type
767
tissue
460
primary cell
89
in vitro differentiated cells
47
cell line
stem cell
Organ
200
kidney
178
heart
72
liver
72
pancreas
53
eye
49
connective tissue
48
adipose tissue
45
blood vessel
45
vasculature
39
artery
38
brain
32
musculature of body
20
lung
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
Project
672
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
96
hg19
Lab
443
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_slims!
3D chromatin structure
audit.ERROR.category!
inconsistent ontology term
biosample_type!
stem cell
files.file_type!
bam
BIOSAMPLE
ASSAY
767 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
pCHi-C
RRBS
WGBS
MeRIP-seq
RNA microarray
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
islet of Langerhans
30
41
26
7
4
1
4
liver
20
23
1
20
1
1
3
left cardiac atrium
40
18
subcutaneous abdominal adipose tissue
36
3
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