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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1028
total RNA-seq
528
ChIP-seq
244
ATAC-seq
180
single cell RNA-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
1
DNase-seq
Assay category
1224
Transcription
528
DNA binding
273
DNA accessibility
38
DNA methylation
3D chromatin structure
Target of assay
314
histone modification
313
histone
214
narrow histone mark
187
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
461
February, 2021
262
August, 2017
227
August, 2021
193
May, 2020
192
October, 2019
120
July, 2018
81
February, 2023
71
July, 2019
66
May, 2022
47
September, 2023
40
May, 2021
40
May, 2024
38
November, 2019
31
March, 2020
29
October, 2018
25
November, 2017
24
February, 2020
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1903
bam
1769
bigWig
1070
tsv
968
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2092
Homo sapiens
Biosample type
2095
tissue
605
primary cell
257
in vitro differentiated cells
210
cell line
9
stem cell
Organ
536
connective tissue
477
adipose tissue
439
pancreas
311
liver
222
heart
211
kidney
146
brain
74
bone element
70
blood vessel
70
vasculature
53
eye
48
artery
38
musculature of body
34
limb
20
lung
17
nerve
16
skeleton
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
1998
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1301
GRCh38
1236
hg19
Lab
1746
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
8
audit script error
Audit category:
23
missing controlled_by
assay_slims!
3D chromatin structure
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
2095 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
RNA microarray
DNase-seq
tissue
islet of Langerhans
292
71
68
6
7
4
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
kidney
49
9
75
64
6
1
bone tissue
58
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