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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1025
total RNA-seq
505
ChIP-seq
255
ATAC-seq
179
single cell RNA-seq
27
snATAC-seq
26
WGBS
22
pCHi-C
15
small RNA-seq
7
RRBS
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
1
DNase-seq
Assay category
1219
Transcription
505
DNA binding
283
DNA accessibility
33
DNA methylation
3D chromatin structure
Target of assay
295
histone modification
294
histone
207
narrow histone mark
183
control
87
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
461
February, 2021
236
August, 2017
227
August, 2021
193
May, 2020
192
October, 2019
120
July, 2018
95
February, 2023
68
July, 2019
64
May, 2022
47
September, 2023
40
May, 2021
40
May, 2024
38
November, 2019
29
October, 2018
28
March, 2020
25
November, 2017
22
February, 2020
21
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
1860
bam
1713
bigWig
1066
tsv
930
bed narrowPeak
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
144
bigBed broadPeak
72
txt
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2069
Homo sapiens
Biosample type
2072
tissue
934
primary cell
262
in vitro differentiated cells
212
cell line
9
stem cell
Organ
536
connective tissue
477
adipose tissue
439
pancreas
311
liver
222
heart
211
kidney
146
brain
74
bone element
70
blood vessel
70
vasculature
53
eye
48
artery
musculature of body
34
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
1975
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1296
GRCh38
1227
hg19
Lab
1723
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
8
audit script error
Audit category:
23
missing controlled_by
assay_slims!
3D chromatin structure
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed narrowPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
2072 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
68
6
7
4
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
kidney
49
9
75
64
6
1
bone tissue
58
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