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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
47
DNA binding
24
Transcription
4
DNA accessibility
3D chromatin structure
2
DNA methylation
Target of assay
31
control
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
Date released
27
November, 2017
14
July, 2019
12
February, 2020
11
October, 2019
9
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
240
bam
216
bigWig
bed narrowPeak
124
bigBed narrowPeak
114
tagAlign
45
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
26
tsv
17
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
79
Homo sapiens
Biosample type
72
tissue
7
primary cell
Organ
702
pancreas
587
connective tissue
466
adipose tissue
365
epithelium
345
liver
199
heart
170
kidney
151
bone element
98
vasculature
96
blood vessel
79
brain
67
artery
30
musculature of body
28
eye
26
limb
22
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
20
hg19
16
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
assay_slims!
3D chromatin structure
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bedgraph
bed narrowPeak
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
8
1
1
1
cingulate gyrus
7
layer of hippocampus
6
cerebellum (Hemisphere)
2
1
1
1
substantia nigra
4
1
+ See 24 more…
primary cell
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
See all biosamples
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