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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
44
total RNA-seq
19
WGBS
18
small RNA-seq
15
RRBS
9
DNase-seq
6
ATAC-seq
4
single cell RNA-seq
3
FAIRE-seq
Assay category
67
DNA binding
66
Transcription
34
DNA methylation
18
DNA accessibility
3D chromatin structure
Target of assay
61
transcription factor
21
RNA binding protein
15
recombinant protein
9
control
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
316
August, 2021
309
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
100
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
59
November, 2019
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
166
bam
159
bigWig
85
fastq
78
bed narrowPeak
73
bigBed narrowPeak
65
tsv
30
bed bedMethyl
30
bigBed bedMethyl
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
185
Homo sapiens
Biosample type
99
tissue
58
cell line
28
primary cell
Organ
59
liver
25
heart
18
connective tissue
17
brain
15
blood
15
bodily fluid
13
adipose tissue
13
pancreas
11
epithelium
11
kidney
10
vasculature
9
blood vessel
9
spleen
6
musculature of body
3
artery
2
pericardium
1
eye
1
limb
Project
185
AMP
Genome assembly (visualization)
156
GRCh38
156
hg19
Lab
185
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent control run_type
assay_slims!
3D chromatin structure
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
small intestine
BIOSAMPLE
ASSAY
185 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
RRBS
DNase-seq
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
liver
4
2
1
2
spleen
6
2
1
body of pancreas
2
2
2
2
omental fat pad
4
1
1
+ See 26 more…
cell line
HepG2
42
1
GM12878
15
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 17 more…
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