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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
155
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
31
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
274
DNA binding
259
Transcription
191
DNA accessibility
11
DNA methylation
3D chromatin structure
Target of assay
232
histone
232
histone modification
122
broad histone mark
110
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
73
September, 2018
55
June, 2019
54
August, 2017
48
July, 2018
43
April, 2018
33
October, 2019
27
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
November, 2018
Available data
604
bam
594
bigWig
290
bed narrowPeak
264
tsv
235
fastq
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
752
Homo sapiens
Biosample type
2754
tissue
752
primary cell
632
cell line
373
in vitro differentiated cells
8
stem cell
Organ
246
epithelium
190
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
548
AMP
204
T1D
Genome assembly (visualization)
614
hg19
520
GRCh38
Lab
513
AMP-T2D consortium
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
54
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
audit.WARNING.category!
inconsistent control read length
lab.title!
Klaus Kaestner, Upenn
organ_slims!
stomach
BIOSAMPLE
ASSAY
752 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic beta cell
11
10
7
12
pancreatic alpha cell
11
10
6
12
pancreatic ductal cell
13
4
4
10
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