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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
31
DNA binding
24
Transcription
3D chromatin structure
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
15
July, 2019
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
77
bam
53
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
32
bed bed3+
26
tsv
19
tagAlign
11
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
96
Homo sapiens
Biosample type
81
tissue
15
primary cell
Organ
786
pancreas
677
liver
605
connective tissue
459
adipose tissue
423
epithelium
323
kidney
293
heart
160
vasculature
159
bone element
155
blood vessel
121
artery
96
brain
69
limb
68
blood
68
bodily fluid
58
eye
57
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
96
AMP
Genome assembly (visualization)
49
GRCh38
44
hg19
Lab
96
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
audit.WARNING.category!
inconsistent control run_type
target.investigated_as!
histone
BIOSAMPLE
ASSAY
96 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
choroid plexus epithelial cell
1
2
1
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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