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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
56
single cell RNA-seq
44
ChIP-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
165
Transcription
44
DNA binding
39
DNA accessibility
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
112
May, 2021
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
4
March, 2020
4
March, 2023
Available data
142
bam
142
bigWig
98
tsv
44
bed narrowPeak
44
tagAlign
Organism
265
Homo sapiens
Biosample type
164
primary cell
95
tissue
9
cell line
2
stem cell
Organ
47
kidney
30
pancreas
19
lung
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
200
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
142
GRCh38
142
hg19
Lab
Klaus Kaestner, Upenn
196
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
7
inconsistent ontology term
assay_slims!
3D chromatin structure
award.project!
AMP
lab.title!
Klaus Kaestner, Upenn
organ_slims!
stomach
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
270 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
44
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
kidney
47
islet of Langerhans
7
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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