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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ATAC-seq
Assay category
18
DNA accessibility
Date released
13
February, 2023
5
February, 2021
Available data
2525
bam
2347
bigWig
1322
tsv
1288
bed narrowPeak
724
fastq
684
bigBed narrowPeak
259
bed broadPeak
256
bed bed3+
228
tagAlign
222
bigBed broadPeak
161
txt
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
11
bed bed3
7
bed bedgraph
7
csv
3
bedpe bed3+
2
ibed
1
tagAlign bed3+
1
tar
Organism
18
Homo sapiens
Biosample type
12
in vitro differentiated cells
5
tissue
1
primary cell
Organ
10
connective tissue
4
bone element
4
skeleton
1
brain
liver
Project
18
AMP
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
15
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
organ_slims!
liver
BIOSAMPLE
ASSAY
18 results
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Clear Filters
ATAC-seq
in vitro differentiated cells
chondrocyte
5
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
primary cell
osteoblast
1
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