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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
pCHi-C
13
total RNA-seq
4
ATAC-seq
3
ChIP-seq
Assay category
13
Transcription
3D chromatin structure
4
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
303
October, 2019
274
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
100
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
54
November, 2019
49
April, 2018
48
December, 2017
47
September, 2023
44
March, 2020
40
May, 2024
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
3
August, 2018
3
January, 2018
3
June, 2018
2
March, 2019
2
March, 2023
1
August, 2022
1
October, 2022
Available data
37
tsv
18
bigWig
14
bam
3
bed narrowPeak
Organism
44
Homo sapiens
Biosample type
33
tissue
11
cell line
in vitro differentiated cells
stem cell
Organ
13
pancreas
5
epithelium
5
heart
3
musculature of body
2
blood vessel
2
brain
2
intestine
2
kidney
2
liver
2
vasculature
1
adipose tissue
1
adrenal gland
1
connective tissue
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
37
AMP
7
T1D
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_slims!
3D chromatin structure
biosample_type!
in vitro differentiated cells
stem cell
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
44 results
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Clear Filters
pCHi-C
total RNA-seq
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
1
2
aorta
1
1
heart left ventricle
1
1
heart right ventricle
1
1
+ See 16 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
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