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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
7
total RNA-seq
2
ATAC-seq
1
WGBS
Assay category
66
DNA binding
38
DNA accessibility
7
Transcription
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
February, 2021
3
February, 2020
1
July, 2019
Available data
108
bam
91
bigWig
86
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
112
Homo sapiens
Biosample type
112
tissue
Organ
902
pancreas
769
liver
460
epithelium
345
kidney
323
heart
283
brain
165
vasculature
159
blood vessel
138
connective tissue
112
limb
103
adipose tissue
89
musculature of body
75
artery
68
blood
68
bodily fluid
61
eye
43
nerve
25
spleen
20
lung
20
vein
18
ureter
9
bone element
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
112
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
biosample_type!
in vitro differentiated cells
month_released!
February, 2021
January, 2018
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
forelimb muscle
1
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