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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
single cell RNA-seq
54
total RNA-seq
10
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
116
Transcription
10
DNA binding
6
DNA accessibility
3D chromatin structure
1
DNA methylation
Target of assay
9
control
1
RNA binding protein
1
transcription factor
Date released
65
August, 2021
47
September, 2023
May, 2023
9
October, 2019
8
February, 2021
5
April, 2019
3
December, 2019
3
July, 2019
2
March, 2020
Available data
bed narrowPeak
113
bam
103
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
142
Homo sapiens
Biosample type
131
tissue
primary cell
11
cell line
Organ
586
connective tissue
475
adipose tissue
448
pancreas
339
liver
192
heart
150
bone element
142
kidney
86
blood vessel
86
vasculature
73
brain
72
epithelium
65
artery
26
eye
26
limb
25
musculature of body
23
embryo
20
lung
16
nerve
11
spleen
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
47
KPMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
63
Katalin Susztak, Upenn
47
KPMP
30
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
7
audit script error
assay_slims!
3D chromatin structure
biosample_type!
primary cell
files.file_type!
bed narrowPeak
month_released!
May, 2023
BIOSAMPLE
ASSAY
142 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
RRBS
small RNA-seq
tissue
kidney
61
49
7
6
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
cell line
RCC 7860 vector
1
1
1
HEK293T
2
RCC 7860 HIF1a re-expression
1
1
RCC 7860 HIF2a over-expression
1
1
RCC 7860 VHL
1
+ See 1 more…
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