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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
117
total RNA-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
6
single cell RNA-seq
5
GRO-seq
3
RRBS
2
FAIRE-seq
Assay category
763
DNA binding
123
Transcription
42
DNA accessibility
14
DNA methylation
3D chromatin structure
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
229
August, 2017
94
December, 2017
87
November, 2018
58
October, 2018
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
August, 2018
1
March, 2019
Available data
2783
bam
2555
bigWig
1522
bed narrowPeak
1330
tsv
947
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bigBed broadPeak
235
bed bed3+
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
bedpe bed3+
2
ibed
1
tagAlign bed3+
1
vcf
Organism
940
Homo sapiens
Biosample type
426
cell line
primary cell
377
tissue
140
in vitro differentiated cells
4
stem cell
Organ
464
liver
213
pancreas
97
connective tissue
60
blood
60
bodily fluid
43
adipose tissue
27
embryo
24
spleen
19
epithelium
12
brain
2
musculature of body
Project
947
AMP
Genome assembly (visualization)
782
hg19
722
GRCh38
5
hg18
Lab
921
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
45
missing controlled_by
Audit category:
51
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
3D chromatin structure
biosample_type!
primary cell
month_released!
August, 2018
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
947 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
GRO-seq
RRBS
FAIRE-seq
cell line
HepG2
360
5
1
GM12878
60
tissue
islet of Langerhans
28
97
20
1
6
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
+ See 8 more…
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 6 more…
stem cell
hESC
3
1
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