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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
45
DNA binding
9
Transcription
2
DNA accessibility
2
DNA methylation
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
9
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
6
July, 2019
4
August, 2021
2
March, 2020
1
February, 2020
1
June, 2019
Available data
53
bam
43
bigWig
38
bed narrowPeak
37
bigBed narrowPeak
10
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
59
Homo sapiens
Biosample type
59
tissue
primary cell
Organ
774
liver
645
connective tissue
594
pancreas
489
adipose tissue
377
heart
317
kidney
265
brain
198
blood vessel
198
vasculature
158
bone element
artery
118
limb
117
epithelium
76
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
43
GRCh38
42
hg19
Lab
59
AMP-T2D consortium
assay_slims!
3D chromatin structure
biosample_type!
primary cell
organ_slims!
artery
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
aorta
13
1
4
2
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
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