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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
45
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
66
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
5
February, 2023
1
February, 2021
Available data
1092
bam
1036
bigWig
599
fastq
505
bed narrowPeak
504
tsv
172
bigBed narrowPeak
153
zippedFastqFolder
144
tagAlign
57
bed bed3+
49
bed broadPeak
49
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bedgraph
6
bed bed3
4
txt
3
bedpe bed3+
2
csv
2
ibed
1
tar
Organism
159
Homo sapiens
Biosample type
154
primary cell
5
in vitro differentiated cells
tissue
Organ
80
epithelium
80
pancreas
6
connective tissue
liver
Project
153
HPAP
6
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
153
Klaus Kaestner, Upenn
6
AMP-T2D consortium
assay_slims!
3D chromatin structure
biosample_type!
tissue
organ_slims!
liver
BIOSAMPLE
ASSAY
159 results
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single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
osteoblast
1
in vitro differentiated cells
chondrocyte
5
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