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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
15
total RNA-seq
7
DNase-seq
5
ATAC-seq
4
single cell RNA-seq
1
small RNA-seq
Assay category
56
DNA binding
20
Transcription
12
DNA accessibility
3D chromatin structure
Target of assay
33
histone
33
histone modification
23
transcription factor
16
broad histone mark
16
narrow histone mark
5
RNA binding protein
2
chromatin remodeller
Date released
48
August, 2017
14
June, 2019
6
February, 2021
6
July, 2019
5
November, 2020
2
April, 2018
2
August, 2021
2
July, 2018
2
October, 2019
1
May, 2021
Available data
95
bam
88
bigWig
62
bed narrowPeak
58
fastq
21
tsv
20
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
88
Homo sapiens
Biosample type
tissue
57
in vitro differentiated cells
31
primary cell
Organ
356
liver
299
epithelium
249
pancreas
88
connective tissue
83
vasculature
78
blood vessel
67
heart
58
artery
40
kidney
29
embryo
28
blood
28
bodily fluid
17
brain
15
vein
11
musculature of body
3
eye
2
adipose tissue
1
pericardium
Project
88
AMP
Genome assembly (visualization)
87
hg19
84
GRCh38
Lab
86
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
3D chromatin structure
biosample_type!
tissue
month_released!
December, 2018
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
in vitro differentiated cells
adipocyte
47
4
1
3
cardiac fibroblast
1
osteoblast
1
primary cell
osteoblast
5
1
1
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
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