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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ATAC-seq
4
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
24
DNA accessibility
4
Transcription
Date released
306
November, 2017
219
May, 2021
148
May, 2020
125
February, 2021
69
August, 2021
62
November, 2018
52
August, 2017
48
July, 2018
43
April, 2018
41
September, 2018
40
October, 2019
36
June, 2019
34
February, 2023
27
December, 2018
27
July, 2019
23
February, 2018
22
January, 2019
20
December, 2017
20
March, 2020
12
November, 2020
10
November, 2019
8
January, 2021
7
December, 2019
6
January, 2018
5
September, 2017
4
August, 2018
4
March, 2023
3
June, 2018
2
May, 2019
2
October, 2018
1
October, 2022
Available data
12
tsv
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
33
Homo sapiens
Biosample type
tissue
16
in vitro differentiated cells
12
primary cell
6
cell line
Organ
13
connective tissue
1
epithelium
1
pancreas
Project
29
AMP
5
T1D
Genome assembly (visualization)
12
hg19
Lab
Klaus Kaestner, Upenn
26
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
assay_slims!
3D chromatin structure
biosample_type!
tissue
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone
BIOSAMPLE
ASSAY
34 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
EndoC_BH1
3
2
1
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