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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
103
ATAC-seq
47
total RNA-seq
3
DNase-seq
1
RRBS
1
pCHi-C
Assay category
114
DNA binding
106
DNA accessibility
47
Transcription
1
DNA methylation
Target of assay
75
histone
75
histone modification
38
narrow histone mark
36
broad histone mark
24
transcription factor
21
control
RNA binding protein
3
chromatin remodeller
Date released
354
May, 2021
287
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
121
August, 2017
110
February, 2023
88
August, 2021
73
September, 2018
68
October, 2019
59
September, 2020
51
June, 2019
48
July, 2018
44
December, 2017
43
April, 2018
41
November, 2018
39
February, 2018
27
July, 2019
25
December, 2018
21
March, 2020
19
November, 2019
17
January, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
September, 2017
4
August, 2018
4
March, 2023
4
May, 2019
3
June, 2018
2
October, 2018
1
October, 2022
Available data
196
bam
178
bigWig
106
fastq
70
bed narrowPeak
46
tsv
26
tagAlign
18
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
7
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
269
Homo sapiens
Biosample type
tissue
204
primary cell
64
in vitro differentiated cells
1
cell line
Organ
64
connective tissue
41
pancreas
29
epithelium
1
liver
Project
224
AMP
45
T1D
Genome assembly (visualization)
180
hg19
131
GRCh38
Lab
224
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
biosample_type!
tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
269 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
skeletal muscle myoblast
13
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
+ See 29 more…
in vitro differentiated cells
adipocyte
63
1
cell line
HepG2
1
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