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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
19
ATAC-seq
19
total RNA-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
1
RRBS
1
small RNA-seq
Assay category
68
DNA binding
26
DNA accessibility
24
Transcription
3D chromatin structure
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
control
5
RNA binding protein
2
chromatin remodeller
Date released
60
August, 2017
14
June, 2019
13
February, 2023
11
February, 2021
7
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
88
bigWig
86
bam
62
bed narrowPeak
52
fastq
21
tsv
19
bed bed3+
18
bigBed narrowPeak
12
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
125
Homo sapiens
Biosample type
tissue
89
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
471
epithelium
412
pancreas
365
liver
125
connective tissue
93
vasculature
88
blood vessel
76
heart
66
artery
63
blood
63
bodily fluid
49
kidney
30
embryo
18
vein
12
brain
12
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
124
AMP
1
T1D
Genome assembly (visualization)
105
hg19
85
GRCh38
Lab
120
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
3D chromatin structure
biosample_type!
tissue
organ_slims!
limb
target.investigated_as!
control
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
59
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
osteoblast
2
5
1
1
cardiac fibroblast
3
3
1
mesenchymal stem cell
6
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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