Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
741
ChIP-seq
343
total RNA-seq
229
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
10
RRBS
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
741
DNA binding
534
Transcription
319
DNA accessibility
59
DNA methylation
3D chromatin structure
Target of assay
360
transcription factor
269
histone
269
histone modification
139
broad histone mark
130
narrow histone mark
113
control
89
recombinant protein
74
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
324
November, 2017
227
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
62
November, 2018
62
October, 2019
59
August, 2017
59
September, 2020
55
June, 2019
48
July, 2018
August, 2021
43
April, 2018
27
December, 2018
27
July, 2019
23
January, 2019
15
November, 2019
12
November, 2020
11
March, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
March, 2023
2
October, 2018
1
January, 2018
1
October, 2022
Available data
1179
bam
1105
bigWig
835
fastq
682
bed narrowPeak
464
bigBed narrowPeak
372
tsv
153
zippedFastqFolder
116
tagAlign
108
bed broadPeak
108
bigBed broadPeak
32
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
4
tar
2
bed bed3
2
csv
1
txt
Organism
1685
Homo sapiens
Biosample type
2534
tissue
1074
primary cell
615
cell line
348
in vitro differentiated cells
10
stem cell
Organ
471
epithelium
431
pancreas
378
liver
99
vasculature
93
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
53
kidney
38
connective tissue
20
vein
18
brain
14
musculature of body
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
1153
AMP
321
HPAP
213
T1D
2
community
Genome assembly (visualization)
1121
hg19
987
GRCh38
Lab
1116
AMP-T2D consortium
321
Klaus Kaestner, Upenn
244
Kyle Gaulton, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
142
inconsistent ontology term
27
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
assay_slims!
3D chromatin structure
month_released!
August, 2021
BIOSAMPLE
ASSAY
1689 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 92 more…
cell line
HepG2
360
5
1
1
2
EndoC_BH1
15
33
19
6
3
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
+ See 11 more…
See all biosamples
Download