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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
65
total RNA-seq
9
ATAC-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
91
DNA binding
67
Transcription
10
DNA accessibility
3D chromatin structure
Target of assay
63
transcription factor
18
control
10
RNA binding protein
10
chromatin remodeller
8
histone
8
histone modification
7
recombinant protein
4
broad histone mark
4
narrow histone mark
Date released
68
February, 2021
27
December, 2018
27
October, 2019
18
January, 2019
15
November, 2018
11
August, 2021
6
March, 2020
5
February, 2023
2
March, 2023
1
January, 2018
1
October, 2022
Available data
165
bam
139
bigWig
81
bed narrowPeak
69
tsv
61
bigBed narrowPeak
60
fastq
8
tagAlign
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
txt
Organism
178
Homo sapiens
Biosample type
2344
tissue
678
primary cell
366
in vitro differentiated cells
181
cell line
10
stem cell
Organ
liver
90
pancreas
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
174
AMP
5
T1D
2
community
Genome assembly (visualization)
147
hg19
146
GRCh38
Lab
171
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
16
inconsistent ontology term
1
inconsistent control
assay_slims!
3D chromatin structure
organ_slims!
epithelium
eye
liver
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
HiChIP
DNase-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
H1-hESC
8
EndoC_BH1
3
2
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