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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
20
ATAC-seq
9
total RNA-seq
5
pCHi-C
2
single cell RNA-seq
Assay category
75
DNA binding
20
DNA accessibility
11
Transcription
3D chromatin structure
Target of assay
33
histone
33
histone modification
30
control
18
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
20
August, 2017
August, 2021
13
February, 2023
9
December, 2017
8
February, 2018
5
November, 2019
4
February, 2021
4
March, 2020
2
December, 2019
2
October, 2019
1
August, 2018
Available data
254
bam
bigWig
141
fastq
124
tsv
107
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
111
Homo sapiens
Biosample type
762
tissue
468
primary cell
116
cell line
111
in vitro differentiated cells
7
stem cell
Organ
38
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
111
AMP
Genome assembly (visualization)
27
hg19
12
GRCh38
Lab
69
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assay_slims!
3D chromatin structure
files.file_type!
bigWig
month_released!
August, 2021
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
20
5
1
pancreatic endoderm
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
2
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