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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
115
ChIP-seq
17
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
127
Transcription
115
DNA binding
18
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
37
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
89
May, 2021
48
August, 2017
34
December, 2017
31
February, 2018
22
August, 2021
22
February, 2021
8
February, 2023
4
January, 2018
4
October, 2019
2
March, 2020
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
264
Homo sapiens
Biosample type
1777
tissue
609
primary cell
522
cell line
264
in vitro differentiated cells
3
stem cell
Organ
62
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
264
AMP
Genome assembly (visualization)
259
hg19
243
GRCh38
4
hg18
Lab
254
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
3D chromatin structure
organ_slims!
skin of body
BIOSAMPLE
ASSAY
264 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
47
3
1
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
4
12
1
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