Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
120
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
65
histone
65
histone modification
33
narrow histone mark
33
transcription factor
31
broad histone mark
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
54
August, 2017
43
December, 2017
39
February, 2018
4
January, 2018
1
August, 2018
Available data
254
bam
237
bigWig
141
fastq
124
tsv
107
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
141
Homo sapiens
Biosample type
426
cell line
409
primary cell
377
tissue
141
in vitro differentiated cells
4
stem cell
Organ
55
connective tissue
27
embryo
19
epithelium
15
liver
1
adipose tissue
Project
141
AMP
Genome assembly (visualization)
118
GRCh38
118
hg19
4
hg18
Lab
141
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
3D chromatin structure
month_released!
August, 2021
BIOSAMPLE
ASSAY
141 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
See all biosamples
Download