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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
132
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
153
DNA binding
134
Transcription
31
DNA accessibility
3D chromatin structure
Target of assay
88
histone
88
histone modification
45
broad histone mark
42
narrow histone mark
38
transcription factor
29
control
9
RNA binding protein
chromatin remodeller
Date released
132
May, 2021
66
August, 2017
42
August, 2021
December, 2017
39
February, 2018
26
February, 2021
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
246
bam
220
bigWig
131
tsv
96
fastq
94
bed narrowPeak
40
tagAlign
9
bed bed3+
4
bed bedgraph
3
bedpe bed3+
3
bigBed narrowPeak
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
329
Homo sapiens
Biosample type
2618
tissue
989
primary cell
622
cell line
329
in vitro differentiated cells
7
stem cell
Organ
82
connective tissue
16
embryo
5
epithelium
3
pancreas
1
adipose tissue
1
heart
Project
329
AMP
Genome assembly (visualization)
241
hg19
225
GRCh38
4
hg18
Lab
278
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
3D chromatin structure
month_released!
December, 2017
February, 2023
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
329 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
65
4
7
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
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