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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
158
ChIP-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
333
Transcription
275
DNA accessibility
158
DNA binding
47
DNA methylation
3D chromatin structure
Target of assay
119
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
February, 2021
July, 2018
43
April, 2018
33
October, 2019
18
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
412
bam
390
bigWig
361
fastq
170
tsv
168
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
16
tagAlign
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
814
Homo sapiens
Biosample type
2576
tissue
814
primary cell
636
cell line
258
in vitro differentiated cells
10
stem cell
Organ
360
epithelium
306
pancreas
34
connective tissue
33
kidney
32
vasculature
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
440
AMP
321
HPAP
53
T1D
Genome assembly (visualization)
377
hg19
338
GRCh38
Lab
440
AMP-T2D consortium
321
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
Audit category:
45
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
files.file_type!
bed bedMethyl
month_released!
July, 2018
May, 2021
BIOSAMPLE
ASSAY
814 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
35
13
5
31
Langerhans cell
85
48
pancreatic beta cell
21
23
13
3
16
exocrine cell
39
pancreatic acinar cell
4
9
8
7
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