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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
260
DNA accessibility
253
DNA binding
58
DNA methylation
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
29
October, 2019
27
July, 2019
27
June, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
599
bam
599
bigWig
404
fastq
285
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
bed broadPeak
44
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
1024
Homo sapiens
Biosample type
2454
tissue
1024
primary cell
340
in vitro differentiated cells
282
cell line
10
stem cell
Organ
374
epithelium
343
pancreas
31
connective tissue
24
kidney
21
vasculature
19
blood vessel
16
vein
13
musculature of body
11
liver
9
heart
8
blood
8
bodily fluid
7
brain
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
499
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
572
hg19
485
GRCh38
Lab
464
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
48
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
files.file_type!
bed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1024 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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