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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
total RNA-seq
152
ChIP-seq
129
ATAC-seq
73
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
241
Transcription
187
DNA accessibility
152
DNA binding
11
DNA methylation
3D chromatin structure
Target of assay
132
histone
132
histone modification
74
broad histone mark
58
narrow histone mark
23
control
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
September, 2020
27
July, 2019
20
October, 2019
11
July, 2018
10
April, 2018
8
January, 2021
8
June, 2019
5
December, 2019
5
November, 2020
4
August, 2021
3
November, 2017
2
August, 2017
2
June, 2018
1
May, 2019
1
November, 2018
1
September, 2018
Available data
417
bigWig
415
bam
227
bed narrowPeak
162
tsv
129
fastq
100
tagAlign
bigBed narrowPeak
54
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
608
Homo sapiens
Biosample type
1761
tissue
608
primary cell
370
in vitro differentiated cells
220
cell line
10
stem cell
Organ
319
epithelium
pancreas
23
connective tissue
20
kidney
12
vasculature
11
liver
10
blood vessel
8
blood
8
bodily fluid
7
brain
7
heart
7
vein
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
272
AMP
204
T1D
132
HPAP
Genome assembly (visualization)
357
hg19
260
GRCh38
Lab
239
Kyle Gaulton, UCSD
237
AMP-T2D consortium
132
Klaus Kaestner, Upenn
Audit category:
27
audit script error
26
inconsistent ontology term
assay_slims!
3D chromatin structure
files.file_type!
bigBed narrowPeak
month_released!
September, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
608 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
Langerhans cell
45
48
CD8-positive, alpha-beta T cell
4
33
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
22
1
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