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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
246
total RNA-seq
161
ATAC-seq
135
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
6
WGBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
382
Transcription
279
DNA binding
228
DNA accessibility
17
DNA methylation
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
40
September, 2020
33
October, 2019
25
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
607
bam
607
bigWig
409
fastq
295
bed narrowPeak
268
tsv
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
923
Homo sapiens
Biosample type
2250
tissue
923
primary cell
658
cell line
389
in vitro differentiated cells
10
stem cell
Organ
319
epithelium
263
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
551
AMP
204
T1D
168
HPAP
Genome assembly (visualization)
617
hg19
533
GRCh38
Lab
516
AMP-T2D consortium
239
Kyle Gaulton, UCSD
168
Klaus Kaestner, Upenn
Audit category:
54
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
files.file_type!
zippedFastqFolder
month_released!
February, 2020
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
923 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
WGBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
6
Langerhans cell
33
27
pancreatic beta cell
13
21
10
12
CD8-positive, alpha-beta T cell
33
4
2
1
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