Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
27
DNase-seq
25
ATAC-seq
1
FAIRE-seq
Assay category
109
DNA binding
53
DNA accessibility
Target of assay
99
histone
99
histone modification
52
narrow histone mark
47
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
46
September, 2018
45
June, 2019
33
August, 2017
20
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
2
November, 2020
1
February, 2021
Available data
448
bam
428
bigWig
409
fastq
213
tsv
162
bed narrowPeak
153
zippedFastqFolder
107
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
26
bed bed3+
12
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
162
Homo sapiens
Biosample type
871
tissue
162
primary cell
113
in vitro differentiated cells
95
cell line
2
stem cell
Organ
106
epithelium
68
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
liver
3
eye
Project
162
AMP
Genome assembly (visualization)
158
GRCh38
155
hg19
Lab
162
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
month_released!
May, 2021
organ_slims!
liver
BIOSAMPLE
ASSAY
162 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
pancreatic acinar cell
8
5
+ See 24 more…
See all biosamples
Download