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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
254
Transcription
247
DNA binding
108
DNA accessibility
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
23
October, 2019
18
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
609
bam
609
bigWig
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
609
Homo sapiens
Biosample type
1681
tissue
609
primary cell
521
cell line
259
in vitro differentiated cells
3
stem cell
Organ
229
epithelium
192
pancreas
31
connective tissue
28
kidney
27
vasculature
22
blood vessel
17
brain
15
vein
11
musculature of body
10
heart
10
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
419
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
592
hg19
519
GRCh38
Lab
384
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
organ_slims!
limb
BIOSAMPLE
ASSAY
609 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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