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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
129
ATAC-seq
127
total RNA-seq
31
DNase-seq
28
single cell RNA-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
209
DNA binding
169
DNA accessibility
157
Transcription
11
DNA methylation
3D chromatin structure
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
23
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
33
October, 2019
27
July, 2019
18
August, 2017
12
February, 2023
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
2
June, 2018
1
November, 2018
1
September, 2018
Available data
417
bigWig
415
bam
227
bed narrowPeak
162
tsv
100
tagAlign
87
bigBed narrowPeak
51
fastq
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
563
Homo sapiens
Biosample type
2259
tissue
568
cell line
563
primary cell
387
in vitro differentiated cells
10
stem cell
Organ
250
epithelium
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
359
AMP
204
T1D
Genome assembly (visualization)
437
hg19
343
GRCh38
Lab
324
AMP-T2D consortium
239
Kyle Gaulton, UCSD
Klaus Kaestner, Upenn
Audit category:
49
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
3D chromatin structure
lab.title!
Klaus Kaestner, Upenn
organ_slims!
pancreas
stomach
BIOSAMPLE
ASSAY
563 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
RRBS
snATAC-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
1
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