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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ATAC-seq
174
total RNA-seq
158
ChIP-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
10
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
323
Transcription
272
DNA accessibility
158
DNA binding
57
DNA methylation
3D chromatin structure
Target of assay
119
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
25
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
458
bam
433
bigWig
368
fastq
216
tsv
168
bed narrowPeak
134
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
811
Homo sapiens
Biosample type
2648
tissue
811
primary cell
571
cell line
258
in vitro differentiated cells
10
stem cell
Organ
380
epithelium
324
pancreas
37
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
artery
1
pericardium
Project
496
AMP
262
HPAP
53
T1D
Genome assembly (visualization)
433
hg19
381
GRCh38
Lab
496
AMP-T2D consortium
262
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
Audit category:
53
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
month_released!
May, 2021
September, 2020
organ_slims!
artery
BIOSAMPLE
ASSAY
811 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
33
37
13
12
31
Langerhans cell
45
48
pancreatic beta cell
22
20
13
12
16
exocrine cell
39
pancreatic acinar cell
9
4
8
12
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