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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ATAC-seq
176
total RNA-seq
147
single cell RNA-seq
95
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
10
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
325
Transcription
272
DNA accessibility
95
DNA binding
57
DNA methylation
3D chromatin structure
Target of assay
119
histone
119
histone modification
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
37
August, 2017
27
July, 2019
24
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
2
August, 2021
2
October, 2018
1
November, 2018
Available data
397
bam
373
bigWig
328
fastq
218
tsv
134
zippedFastqFolder
114
bed narrowPeak
83
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
29
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
9
tagAlign
2
csv
1
bed bed3
1
tar
Organism
750
Homo sapiens
Biosample type
2397
tissue
750
primary cell
619
cell line
214
in vitro differentiated cells
9
stem cell
Organ
345
epithelium
293
pancreas
33
connective tissue
31
kidney
25
vasculature
20
blood vessel
15
brain
14
vein
11
heart
11
liver
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
435
AMP
262
HPAP
53
T1D
Genome assembly (visualization)
373
hg19
321
GRCh38
Lab
435
AMP-T2D consortium
262
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
Audit category:
44
inconsistent ontology term
27
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
assay_slims!
3D chromatin structure
month_released!
May, 2021
September, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
750 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
33
37
12
9
31
Langerhans cell
45
48
pancreatic beta cell
22
20
12
9
16
exocrine cell
39
pancreatic acinar cell
9
4
12
4
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