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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
265
ChIP-seq
240
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
429
Transcription
285
DNA accessibility
265
DNA binding
57
DNA methylation
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
34
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
49
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
32
October, 2019
24
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
587
bigWig
585
bam
404
fastq
279
bed narrowPeak
263
tsv
153
zippedFastqFolder
97
bigBed narrowPeak
96
tagAlign
42
bed broadPeak
42
bigBed broadPeak
28
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
1053
Homo sapiens
Biosample type
2274
tissue
1053
primary cell
328
in vitro differentiated cells
133
cell line
10
stem cell
Organ
394
epithelium
343
pancreas
37
connective tissue
34
kidney
31
vasculature
26
blood vessel
20
vein
15
brain
14
musculature of body
liver
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
528
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
595
hg19
513
GRCh38
Lab
493
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
50
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
organ_slims!
artery
liver
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1053 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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