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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
660
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
17
WGBS
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
1
DNase-seq
Assay category
1124
Transcription
660
DNA binding
262
DNA accessibility
25
DNA methylation
3D chromatin structure
Target of assay
527
histone
527
histone modification
283
narrow histone mark
244
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
236
October, 2019
227
August, 2021
193
May, 2020
118
July, 2018
115
May, 2019
95
February, 2023
89
August, 2017
80
April, 2019
76
November, 2017
73
July, 2019
47
September, 2023
42
May, 2022
40
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
25
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2188
Homo sapiens
Biosample type
2190
tissue
640
primary cell
249
in vitro differentiated cells
231
cell line
6
stem cell
Organ
502
connective tissue
443
adipose tissue
283
heart
278
pancreas
277
liver
230
kidney
222
brain
158
bone element
127
blood vessel
127
vasculature
82
limb
69
artery
53
eye
41
nerve
29
musculature of body
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2093
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1407
GRCh38
1273
hg19
Lab
1867
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
9
audit script error
assay_slims!
3D chromatin structure
files.file_type!
bed broadPeak
fastq
organ_slims!
lymph node
BIOSAMPLE
ASSAY
2190 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
36
48
7
4
1
4
liver
167
78
20
1
1
2
1
kidney
49
27
75
64
6
1
1
bone element
84
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