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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
766
ChIP-seq
748
total RNA-seq
198
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
9
RRBS
3
snDrop-seq
2
FAIRE-seq
1
DNase-seq
Assay category
936
Transcription
766
DNA binding
218
DNA accessibility
32
DNA methylation
3D chromatin structure
Target of assay
531
histone modification
530
histone
280
narrow histone mark
250
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
233
October, 2019
226
August, 2021
193
May, 2020
123
August, 2017
113
May, 2019
80
April, 2019
77
February, 2023
76
November, 2017
67
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
25
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
15
May, 2023
15
October, 2017
12
November, 2018
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1478
bam
1399
bigWig
861
bed narrowPeak
801
tsv
499
bigBed narrowPeak
222
tagAlign
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2064
Homo sapiens
Biosample type
2066
tissue
686
primary cell
510
cell line
386
in vitro differentiated cells
10
stem cell
Organ
544
connective tissue
485
adipose tissue
pancreas
357
liver
283
heart
230
kidney
229
brain
158
bone element
127
blood vessel
127
vasculature
82
limb
69
artery
53
eye
41
nerve
31
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1999
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1295
GRCh38
1155
hg19
Lab
1778
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
14
missing controlled_by
Audit category:
1
inconsistent control read length
assay_slims!
3D chromatin structure
files.file_type!
bed broadPeak
organ_slims!
lymph node
pancreas
BIOSAMPLE
ASSAY
2066 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
RRBS
snDrop-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
2
382
3
1
3
liver
145
167
20
1
1
3
1
1
kidney
27
49
75
64
6
1
1
bone element
84
heart left ventricle
35
3
2
18
1
4
1
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