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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
594
ChIP-seq
208
ATAC-seq
177
DNase-seq
4
FAIRE-seq
Assay category
594
DNA binding
389
DNA accessibility
3D chromatin structure
Target of assay
519
histone modification
518
histone
265
narrow histone mark
253
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
150
October, 2019
93
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1906
bam
1771
bigWig
1076
tsv
983
bed narrowPeak
561
bigBed narrowPeak
377
fastq
237
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
0
bedpe bed3+
Organism
977
Homo sapiens
Biosample type
983
tissue
404
cell line
295
primary cell
135
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
123
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
pituitary gland
Project
981
AMP
2
T1D
Genome assembly (visualization)
882
GRCh38
776
hg19
Lab
841
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
3D chromatin structure
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
983 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
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