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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
583
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
15
DNase-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
583
DNA binding
307
DNA accessibility
38
DNA methylation
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
234
August, 2017
227
August, 2021
166
May, 2020
June, 2019
120
July, 2018
112
October, 2019
95
February, 2023
82
May, 2019
73
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
39
November, 2019
31
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1501
bam
1341
bigWig
1076
tsv
555
bed narrowPeak
349
fastq
290
bigBed narrowPeak
157
txt
128
tagAlign
64
xls
36
bed bed3+
35
bed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
6
csv
5
bed bed3
Organism
2267
Homo sapiens
Biosample type
2274
tissue
919
primary cell
639
cell line
328
in vitro differentiated cells
9
stem cell
Organ
533
connective tissue
475
adipose tissue
465
pancreas
316
liver
245
heart
220
kidney
158
bone element
126
brain
111
blood vessel
111
vasculature
71
limb
65
artery
51
eye
35
musculature of body
35
nerve
23
spleen
20
lung
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2179
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1445
GRCh38
1358
hg19
Lab
1940
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_slims!
3D chromatin structure
lab.title!
Struan F.A. Grant, CHOP
month_released!
June, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2274 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
34
68
6
7
4
1
1
1
4
adipose tissue
382
1
3
3
1
liver
167
103
20
1
3
1
1
2
1
kidney
49
17
75
64
6
1
1
bone element
84
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