Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
980
total RNA-seq
907
ChIP-seq
222
ATAC-seq
179
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
24
pCHi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1175
Transcription
907
DNA binding
431
DNA accessibility
38
DNA methylation
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
241
October, 2019
227
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
73
July, 2019
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
32
March, 2020
26
November, 2018
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1883
bam
1752
bigWig
1050
tsv
946
bed narrowPeak
561
bigBed narrowPeak
353
fastq
238
tagAlign
213
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
150
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2660
Homo sapiens
Biosample type
2669
tissue
944
primary cell
658
cell line
390
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
486
adipose tissue
476
pancreas
319
liver
307
heart
298
kidney
253
brain
158
bone element
129
blood vessel
129
vasculature
115
limb
72
musculature of body
71
artery
55
eye
42
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
2572
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1859
GRCh38
1705
hg19
Lab
2384
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
3D chromatin structure
month_released!
February, 2020
May, 2022
organ_slims!
esophagus
BIOSAMPLE
ASSAY
2669 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
286
71
50
6
1
7
4
1
1
4
adipose tissue
382
2
3
3
1
liver
147
145
1
2
3
1
1
1
kidney
49
27
75
64
13
6
1
1
bone element
84
+ See 170 more…
See all biosamples
Download