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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
880
ChIP-seq
537
total RNA-seq
177
ATAC-seq
115
single cell RNA-seq
110
DNase-seq
27
WGBS
23
pCHi-C
22
snATAC-seq
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
1
RNA microarray
Assay category
880
DNA binding
667
Transcription
312
DNA accessibility
37
DNA methylation
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
237
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
100
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
69
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
May, 2024
39
May, 2021
39
November, 2019
32
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1357
bam
1237
bigWig
823
bed narrowPeak
619
tsv
474
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
24
bed bedMethyl
24
bigBed bedMethyl
11
txt
5
bed bed3
1
tagAlign bed3+
Organism
1915
Homo sapiens
Biosample type
1924
tissue
994
primary cell
543
cell line
364
in vitro differentiated cells
10
stem cell
Organ
501
pancreas
359
liver
310
heart
kidney
265
brain
132
blood vessel
132
vasculature
112
limb
103
connective tissue
102
adipose tissue
76
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1875
AMP
30
T1D
19
LungMap
Genome assembly (visualization)
1242
GRCh38
1201
hg19
Lab
1764
AMP-T2D consortium
51
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
3D chromatin structure
month_released!
February, 2021
organ_slims!
kidney
thymus
BIOSAMPLE
ASSAY
1924 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
tissue
islet of Langerhans
71
292
68
6
1
4
7
1
4
1
liver
145
167
20
2
3
1
1
1
heart left ventricle
35
3
2
18
3
4
1
1
left cardiac atrium
40
18
1
body of pancreas
35
3
4
4
2
2
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