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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
601
ChIP-seq
Assay category
601
DNA binding
Target of assay
601
histone modification
600
histone
303
broad histone mark
297
narrow histone mark
164
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
168
October, 2019
124
August, 2017
89
May, 2019
70
November, 2017
60
April, 2019
35
May, 2024
30
October, 2018
May, 2020
12
October, 2017
6
January, 2019
5
December, 2017
2
March, 2020
Available data
495
bigWig
493
bed narrowPeak
439
bam
312
bigBed narrowPeak
159
tagAlign
74
fastq
35
bed broadPeak
12
bed bed3+
1
tagAlign bed3+
Organism
595
Homo sapiens
Biosample type
601
tissue
237
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
184
brain
95
heart
73
pancreas
54
blood vessel
54
vasculature
49
limb
43
liver
33
connective tissue
32
adipose tissue
25
musculature of body
24
nerve
20
artery
20
kidney
6
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
599
AMP
2
T1D
Genome assembly (visualization)
475
GRCh38
411
hg19
Lab
566
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
3D chromatin structure
month_released!
May, 2020
BIOSAMPLE
ASSAY
601 results
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ChIP-seq
tissue
islet of Langerhans
51
liver
38
left cardiac atrium
35
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
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