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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
73
single cell RNA-seq
68
DNase-seq
50
total RNA-seq
27
ChIP-seq
16
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
RRBS
1
pCHi-C
1
small RNA-seq
Assay category
160
DNA accessibility
124
Transcription
27
DNA binding
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
127
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
19
April, 2020
14
May, 2023
8
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
1
March, 2020
Available data
153
bed narrowPeak
98
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
13
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
317
Homo sapiens
Biosample type
318
tissue
36
primary cell
19
cell line
Organ
547
connective tissue
501
pancreas
488
adipose tissue
360
liver
310
heart
298
kidney
265
brain
158
bone element
132
blood vessel
132
vasculature
118
limb
76
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
47
KPMP
19
LungMap
Genome assembly (visualization)
165
GRCh38
91
hg19
Lab
141
Katalin Susztak, Upenn
111
AMP-T2D consortium
47
KPMP
19
Xin Sun, UCSD
Audit category:
7
audit script error
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
318 results
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Clear Filters
ATAC-seq
single cell RNA-seq
DNase-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
RRBS
pCHi-C
small RNA-seq
tissue
kidney
75
64
13
49
27
6
1
1
lung
9
10
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
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