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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
4
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
22
DNA binding
4
DNA methylation
3
Transcription
3D chromatin structure
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
2
February, 2020
2
May, 2022
1
January, 2018
July, 2019
1
March, 2020
Available data
63
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
fastq
1
txt
Organism
32
Homo sapiens
Biosample type
32
tissue
Organ
246
pancreas
205
kidney
193
epithelium
175
heart
104
liver
93
bone element
89
connective tissue
53
eye
adipose tissue
45
blood vessel
45
vasculature
39
artery
38
brain
32
musculature of body
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
17
hg19
Lab
32
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
3D chromatin structure
files.file_type!
bam
month_released!
July, 2019
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
1
left ventricle myocardium
1
psoas muscle
1
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