Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
total RNA-seq
14
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
Assay category
34
Transcription
14
DNA binding
10
DNA accessibility
Target of assay
13
histone
13
histone modification
9
narrow histone mark
4
broad histone mark
1
transcription factor
Date released
267
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
59
October, 2019
59
September, 2020
58
May, 2020
47
September, 2023
40
May, 2024
38
March, 2020
25
February, 2020
19
April, 2020
18
July, 2019
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
4
July, 2018
4
March, 2023
3
March, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
November, 2018
1
October, 2022
1
September, 2018
Available data
bam
334
bigWig
324
fastq
313
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
25
tsv
3
tar
Organism
57
Homo sapiens
Biosample type
57
tissue
1
cell line
Organ
25
brain
19
lung
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
liver
2
musculature of body
1
eye
1
nerve
1
pancreas
1
spinal cord
Project
39
AMP
19
LungMap
Genome assembly (visualization)
1
hg19
Lab
39
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
files.file_type!
bam
BIOSAMPLE
ASSAY
58 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
tissue
lung
10
9
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
1
2
caudate nucleus
1
1
+ See 24 more…
cell line
HepG2
1
See all biosamples
Download