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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
15
RRBS
9
WGBS
4
ATAC-seq
3
snDrop-seq
1
pCHi-C
Assay category
31
DNA accessibility
24
DNA methylation
18
Transcription
3D chromatin structure
Date released
267
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
59
October, 2019
59
September, 2020
58
May, 2020
47
September, 2023
40
May, 2024
37
March, 2020
25
February, 2020
19
April, 2020
18
July, 2019
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
4
July, 2018
4
March, 2023
3
March, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
November, 2018
1
October, 2022
1
September, 2018
Available data
bam
632
bigWig
624
tsv
89
txt
45
fastq
30
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bigBed narrowPeak
Organism
161
Homo sapiens
Biosample type
102
tissue
54
primary cell
4
in vitro differentiated cells
1
cell line
Organ
84
bone element
12
epithelium
12
kidney
8
pancreas
5
connective tissue
4
heart
4
liver
2
brain
1
eye
1
musculature of body
1
pericardium
1
vasculature
Project
116
AMP
45
HPAP
Genome assembly (visualization)
20
hg19
Lab
116
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
86
inconsistent ontology term
32
audit script error
assay_slims!
3D chromatin structure
files.file_type!
bam
organ_slims!
small intestine
BIOSAMPLE
ASSAY
161 results
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RNA microarray
snATAC-seq
single cell RNA-seq
RRBS
WGBS
ATAC-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
1
heart left ventricle
1
2
brain
1
islet of Langerhans
1
+ See 7 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
See all biosamples
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