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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
11
snATAC-seq
10
single cell RNA-seq
5
RRBS
2
pCHi-C
2
total RNA-seq
1
ATAC-seq
Assay category
22
DNA binding
12
DNA accessibility
12
Transcription
3D chromatin structure
5
DNA methylation
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
19
April, 2020
2
February, 2020
2
March, 2020
2
May, 2022
1
January, 2018
1
July, 2019
Available data
68
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
52
Homo sapiens
Biosample type
52
tissue
1
primary cell
Organ
248
pancreas
209
kidney
199
epithelium
179
heart
106
liver
93
bone element
90
connective tissue
54
eye
49
adipose tissue
46
vasculature
45
blood vessel
40
brain
39
artery
33
musculature of body
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
34
AMP
19
LungMap
Genome assembly (visualization)
18
hg19
Lab
34
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
assay_slims!
3D chromatin structure
files.file_type!
bam
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
RRBS
pCHi-C
total RNA-seq
ATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
lung
10
9
1
gastrocnemius medialis
1
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
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