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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • 293ChIP-seq
  • 263single cell RNA-seq
  • 245total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 512Transcription
  • 443DNA accessibility
  • 293DNA binding
  • 79DNA methylation
  • 3D chromatin structure
  • 1DNA sequencing
Target of assay
  • 232histone
  • 232histone modification
  • 123broad histone mark
  • 109narrow histone mark
  • 37control
  • 29transcription factor
  • 11RNA binding protein
  • 5nucleotide modification
Date released
  • 267August, 2021
  • 205February, 2023
  • 176May, 2022
  • 143February, 2021
  • 129August, 2017
  • 122May, 2021
  • 59October, 2019
  • 59September, 2020
  • 58May, 2020
  • 47September, 2023
  • 40May, 2024
  • 38March, 2020
  • 25February, 2020
  • 19April, 2020
  • 18July, 2019
  • 16January, 2021
  • 15May, 2023
  • 14November, 2017
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 4July, 2018
  • 4March, 2023
  • 3March, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1November, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • bam
  • 3164bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1357fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 268bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4tar
  • 3bedpe bed3+
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1497Homo sapiens
Biosample type
  • 854tissue
  • 469primary cell
  • 99in vitro differentiated cells
  • 76cell line
  • 7stem cell
Organ
  • 248pancreas
  • 209kidney
  • 199epithelium
  • 179heart
  • 106liver
  • 93bone element
  • 90connective tissue
  • 54eye
  • 49adipose tissue
  • 46vasculature
  • 45blood vessel
  • 40brain
  • 39artery
  • 33musculature of body
  • 20lung
  • 9blood
  • 9bodily fluid
  • 8skeleton
  • 5gonad
  • 5ovary
  • 4limb
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1056AMP
  • 321HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 188hg19
  • 166GRCh38
  • 5hg18
Lab
  • 699AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 141Katalin Susztak, Upenn
  • 139Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 35Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 136inconsistent ontology term
  • 38audit script error
Audit category:
  • 1missing controlled_by
assay_slims!
  • 3D chromatin structure
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1505 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
...and 5 more
tissue
kidney75644961
islet of Langerhans3041267414
bone element84
liver2023120311
left cardiac atrium4018
primary cell
Langerhans cell8548
pancreatic alpha cell294231
pancreatic beta cell161116
exocrine cell39
CD8-positive, alpha-beta T cell3321
in vitro differentiated cells
embryonic stem cell63751
adipocyte81411
chondrocyte5
cardiomyocytes (cardiac muscle cell)22
immature adipocyte22
cell line
HepG219922
EndoC_BH11862321
EndoC-BH1
HEK293T2
GM128781
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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