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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
59
single cell RNA-seq
49
total RNA-seq
37
ChIP-seq
6
snATAC-seq
2
STARR-seq
1
FAIRE-seq
1
RRBS
Assay category
108
Transcription
82
DNA accessibility
37
DNA binding
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
129
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
14
October, 2019
2
July, 2019
1
December, 2019
Available data
160
bed narrowPeak
111
bam
101
bigWig
87
bigBed narrowPeak
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
230
Homo sapiens
Biosample type
218
tissue
12
cell line
Organ
601
liver
492
pancreas
epithelium
251
kidney
225
brain
192
heart
179
connective tissue
152
vasculature
148
blood vessel
101
bone element
84
adipose tissue
79
artery
75
limb
69
blood
69
bodily fluid
52
eye
47
musculature of body
36
nerve
23
spleen
20
embryo
19
lung
18
vein
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
183
AMP
47
KPMP
Genome assembly (visualization)
102
GRCh38
29
hg19
Lab
141
Katalin Susztak, Upenn
47
KPMP
40
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
assay_slims!
3D chromatin structure
files.file_type!
bed bed3+
tsv
organ_slims!
epithelium
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
FAIRE-seq
RRBS
tissue
kidney
75
59
49
27
6
1
1
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
HEK293T
2
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