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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
61
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
2
WGBS
1
pCHi-C
Assay category
82
DNA binding
67
Transcription
46
DNA accessibility
2
DNA methylation
3D chromatin structure
Target of assay
55
histone
55
histone modification
36
broad histone mark
19
control
19
narrow histone mark
8
transcription factor
4
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
24
October, 2019
9
July, 2019
6
August, 2021
3
February, 2020
3
November, 2017
2
March, 2020
Available data
160
bam
133
bigWig
116
bed narrowPeak
68
tsv
66
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
bed bed3+
6
tagAlign
3
fastq
1
bed bedMethyl
1
bigBed bedMethyl
Organism
198
Homo sapiens
Biosample type
127
tissue
66
cell line
5
primary cell
Organ
909
pancreas
775
liver
657
connective tissue
497
epithelium
485
adipose tissue
360
heart
275
kidney
251
brain
220
vasculature
216
blood vessel
159
bone element
137
artery
82
limb
69
blood
69
bodily fluid
57
eye
56
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
198
AMP
Genome assembly (visualization)
168
GRCh38
133
hg19
Lab
198
AMP-T2D consortium
assay_slims!
3D chromatin structure
files.file_type!
bed bed3+
organ_slims!
vein
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
tissue
coronary artery
5
1
36
tibial artery
23
1
1
aorta
13
1
4
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
brain microvascular endothelial cell
3
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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